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ncbi geo
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5
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4
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3.8k
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GEOquery Fails to Download Series Matrix File
geoquery
ncbi geo
geo data
7.5 years ago
fongchunchan
▴ 30
3
votes
2
replies
1.2k
views
Difficulty for analysis of GSE7864
limma
microarray
bioconductor
ncbi geo
updated 7.3 years ago by
Gordon Smyth
50k • written 7.3 years ago by
kevin.m.hao
▴ 10
3
votes
1
reply
1.7k
views
Processing several GSM from GEO database using Barcode and fRMA
frma
barcode
geneexpression
gsm
ncbi geo
updated 6.5 years ago by
Matthew McCall
▴ 830 • written 6.5 years ago by
diana.elassal
• 0
2
votes
3
replies
2.8k
views
NCBI FTP server IP address
NCBI GEO
updated 3.5 years ago by
SAn
• 0 • written 8.2 years ago by
maedakus
▴ 10
2
votes
3
replies
1.6k
views
Using LIMMA for differential gene analysis of microarray data
limma
differential gene expression
ncbi geo
affymetrix microarrays
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
Francesca McGrath
• 0
0
votes
2
replies
1.2k
views
GEOQuery bug, NCBI or package?
geoquery
ncbi geo
biobase
5.4 years ago
cschot3
• 0
6 results • Page
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Comment: Extremely small p-values using Limma for proteomic data
by
Abbey
• 0
Thank you James! This worked to fix the p-values. However, the plot still looks one-sided... any idea what's going on with the left side?…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma
by
Shaimaa Gamal
• 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold
by
j.gilbert
• 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Votes
Answer: Extremely small p-values using Limma for proteomic data
Bioconductor 3.19 is Released!
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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